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ゲノム解析に用いるDPマッチングの分割統治法による高速化
http://hdl.handle.net/10458/445
http://hdl.handle.net/10458/445eda4ca74-53d5-47d1-9e8f-c8ff0ad9d818
名前 / ファイル | ライセンス | アクション |
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KJ00004439520.pdf (738.3 kB)
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Item type | 紀要論文 / Departmental Bulletin Paper(1) | |||||
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公開日 | 2007-06-28 | |||||
タイトル | ||||||
言語 | ja | |||||
タイトル | ゲノム解析に用いるDPマッチングの分割統治法による高速化 | |||||
タイトル | ||||||
言語 | en | |||||
タイトル | A Divide-and-Conquer Method of Dynamic Programming for Genome Informatics | |||||
言語 | ||||||
言語 | jpn | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | Genome Informatics, Dynamic Programming, Divide-and-Conquer, Alignment, Feature Extraction | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | departmental bulletin paper | |||||
その他(別言語等)のタイトル | ||||||
その他のタイトル | ゲノム カイセキ ニ モチイル DP マッチング ノ ブンカツ トウチホウ ニ ヨル コウソクカ | |||||
言語 | ja-Kana | |||||
著者 |
中川, 匠
× 中川, 匠× 吉原, 郁夫× 山森, 一人× 安永, 守利× Nakagawa, Takumi |
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抄録 | ||||||
内容記述タイプ | Abstract | |||||
内容記述 | ABSTRACT Alignment based on DP-matching is used to extract unknown feature pattern embedd ed in genome sequence. To extract feature pattem with base length n, complete set of similarity of c andidate pattern with base length N = 2, 3, ・ ・ ・ , n is required. When extending base length n, number of candidate pattern and execution time i ncrease exponential order O(4n+1 ). This paper propose a new faster method of extracting feature pattern by reusing similartiy which is calculated past step. The method enable extracting feature pattern with base length n = 10 to speed up as much as 9 times than conventional method. |
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言語 | en | |||||
書誌情報 |
ja : 宮崎大学工学部紀要 en : Memoirs of Faculty of Engineering, University of Miyazaki 巻 35, p. 257-262, 発行日 2006-08-30 |
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出版者 | ||||||
言語 | ja | |||||
出版者 | 宮崎大学工学部 | |||||
出版者 | ||||||
言語 | en | |||||
出版者 | Faculty of Engineering, University of Miyazaki | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 05404924 | |||||
書誌レコードID | ||||||
収録物識別子タイプ | NCID | |||||
収録物識別子 | AA00732558 | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |