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High-speed Generation of Logic Function to Identify Exon-Intron Boundaries by Parallel GP
http://hdl.handle.net/10458/346
http://hdl.handle.net/10458/3469aaffef3-27d4-476b-b005-a049f4f7d57e
名前 / ファイル | ライセンス | アクション |
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KJ00002428267.pdf (426.1 kB)
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Item type | 紀要論文 / Departmental Bulletin Paper(1) | |||||
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公開日 | 2007-06-28 | |||||
タイトル | ||||||
言語 | ja | |||||
タイトル | High-speed Generation of Logic Function to Identify Exon-Intron Boundaries by Parallel GP | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
言語 | en | |||||
主題Scheme | Other | |||||
主題 | Genetic Programming, Parallel Computing, Cluster System, Island Model, Matrix Representation Individual | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | departmental bulletin paper | |||||
その他(別言語等)のタイトル | ||||||
その他のタイトル | High-speed Generation of Logic Function to Identify Exon-Intron Boundaries by Parallel GP | |||||
言語 | en | |||||
著者 |
Yamamori, Kunihito
× Yamamori, Kunihito× Fujita, Yuji× Yoshihara, Ikuo× Aikawa, Masaru |
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抄録 | ||||||
内容記述タイプ | Abstract | |||||
内容記述 | Abstract Genetic Programming (GP) is applied to various field. However, it is a problem that GP needs a lot of execution time for large scale problems such as genome informatics. In this paper, we focus on reducing computation time of GP. For this objective, we parallelize GP by island model on a personal computer (PC) cluster system to identify exon-intron boundaries in DNA sequences which is example of application. In addition, we described individuals as an one dimentional matrix to reduce the time of migration which is a process of island model. The paralellized GP achieved linear speedup ratio on each number of PC. Moreover, we show quality of solution to change on each number of PC. |
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言語 | en | |||||
書誌情報 |
ja : 宮崎大学工学部紀要 en : Memoirs of Faculty of Engineering, University of Miyazaki 巻 33, p. 343-348, 発行日 2004-10 |
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出版者 | ||||||
言語 | ja | |||||
出版者 | 宮崎大学工学部 | |||||
出版者 | ||||||
言語 | en | |||||
出版者 | Faculty of Engineering, University of Miyazaki | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 05404924 | |||||
書誌レコードID | ||||||
収録物識別子タイプ | NCID | |||||
収録物識別子 | AA00732558 | |||||
著者版フラグ | ||||||
出版タイプ | VoR | |||||
出版タイプResource | http://purl.org/coar/version/c_970fb48d4fbd8a85 |